Sporting Lokeren 3-1 WIT Georgia Tbilisi BATE Borisov 1-0 Akademisk Zurich 7-0 Brotnjo Dukla Trencin 3-1 Slaven Belupo Kispest 0-1 Zalgiris St. Gallen 5-1 B68 Toftir Enosis 0-2 Bregenz Leiria 0-3 Levadia Maardu Valletta 1-2 Teuta Coleraine 5-0 St. Julia Marek 2-0 Caersws Cementarnica 1-3 FH Hafnarfjordur Constructorul 0-0 Synot St. Clara 2-0 Shirak Rijeka 3-2 St. Patrick's Gloria 2-0 US Luxembourg Helsingborg 1-0 Koper Brno 0-5 Ashdod Zaglebie Lubin 1-1 Dinaburg Obilic 1-2 Haka
Round 1, 2nd Leg
BATE Borisov 2-0 Akademisk(BATE Borisov advances; 3-0 on aggregate) Sporting Lokeren 2-3 WIT Georgia Tbilisi(Lokeren advances; 5-4 on aggregate) Zurich 1-2 Brotnjo(Zurich advances; 8-2 on aggregate) Dukla Trencin 0-5 Slaven Belupo(Slaven Belup advances; 6-3 on aggregate) Kispest 0-0 Zalgiris(Zalgiris advances; 1-0 on aggregate) St. Gallen 6-0 B68 Toftir(St. Gallen advances; 11-1 on aggregate) Enosis 1-3 Bregenz(Bregenz advances; 5-1 on aggregate) Leiria 2-1 Levadia Maardu(Levadia Maardu advances; 4-2 on aggregate) Valletta 0-0 Teuta(Teuta advances; 2-1 on aggregate) Coleraine 2-2 St. Julia(Coleraine advances; 7-2 on aggregate) Marek 1-1 Caersws(Marek advances; 3-1 on aggregate) Cementarnica 2-1 FH Hafnarfjordur(FH Hafnarfjordur advances; 4-3 on aggregate) Constructorul 0-4 Synot(Synot advances; 4-0 on aggregate) St. Clara 3-3 Shirak(St. Clara advances; 5-3 on aggregate) Rijeka 0-1 St. Patrick's(St. Patrick's advances on away goals) Gloria 0-0 US Luxembourg(Gloria advances; 2-0 on aggregate) Helsingborg 0-0 Koper(Helsingborg advances; 1-0 on aggregate) Brno 1-1 Ashdod(Ashdod advances; 6-1 on aggregate) Zaglebie Lubin 0-1 Dinaburg(Dinaburg advances; 2-1 on aggregate) Obilic 1-1 Haka(Haka advances; 3-2 on aggregate)
Round 2, 1st Leg
Slaven Belupo 2-0 Belenenses Coleraine 1-2 Troyes 1860 Munich 0-1 BATE Borisov Villarreal 2-0 FH Hafnarfjordur Fulham 0-0 Haka Sochaux 2-0 Zalgiris Gent 2-0 St. Patrick's VfB Stuttgart 2-0 Sporting Lokeren Torino 1-0 Bregenz Krylya Sovetov 3-0 Dinaburg Teplice 5-1 St. Clara Willem II 1-0 St. Gallen Zurich 1-0 Levadia Maardu Synot 4-0 Helsingborg Gloria 3-0 Teuta Ashdod 1-1 Marek
Round 2, 2nd Leg
Coleraine 1-2 Troyes(Troyes advances; 4-2 on aggregate) Villareal 2-2 FH Hafnarfjordur(Villareal advances; 4-2 on aggregate) Gent 1-3 St. Patrick's(Gent advances on away goals) Krylya Sovetov 1-0 Dinaburg(Krylya Sovetov advances; 4-0 on aggregate) Willem II 1-1 St. Gallen(Willem II advances; 2-1 on aggregate) Zurich 0-0 Levadia Maardu(Zurich advances; 1-0 on aggregate) Gloria 0-1 Teuta(Gloria advances; 3-1 on aggregate) Ashdod 0-1 Marek(Marek advances; 2-1 on aggregate) Fulham 1-1 Haka(Fulham advances on away goals) Sochaux 2-1 Zalgiris(Sochaux advances; 4-1 on aggregate) Slaven Belupo 1-0 Belenenses(Slaven Belupo advances; 3-0 on aggregate) Stuttgart 1-0 Sporting Lokeren(Stuttgart advances; 3-0 on aggregate) Teplice 4-1 St. Clara(Teplice advances; 9-2 on aggregate) Torino 1-1 Bregenz(Torino advances; 2-1 on aggregate) Synot 0-2 Helsingborgs(Synot advances; 4-2 on aggregate) 1860 Munich 0-4 BATE Borisov(BATE Borisov advances; 5-0 on aggregate)
Round 3, 1st Leg
Krylya Sovetov 3-1 Willem II NAC Breda 1-1 Troyes Stuttgart 3-1 Perugia Fulham 1-0 Egaleo Gloria 0-2 Lille Kaiserslautern 2-1 Teplice Bologna 2-0 BATE Borisov Malaga 3-0 Gent Marek 0-3 Slaven Belupo Synot 0-3 Sochaux Torino 2-0 Villarreal Zurich 2-0 Aston Villa
Round 3, 2nd Leg
Troyes 0-0 NAC Breda(Troyes advances on away goal) Perugia 2-1 Stuttgart(Stuttgart advances; 4-3 aggregate) Egaleo 1-1 Fulham(Fulham advances; 2-1 aggregate) Lille 1-0 Gloria(Lille advances; 3-0 aggregate) BATE Borisov 0-0 Bologna(Bologna advances; 2-0 aggregate) Willem II 2-0 Krylya Sovetov(Willem II advances on away goals) Teplice 4-0 Kaiserslautern(Teplice advances; 5-2 aggregate) Gent 1-1 Malaga(Malaga advances; 4-1 aggregate) Slaven Belupo 3-1 Marek(Slaven Belupo advances; 6-1 aggregate) Sochaux 0-0 Synot(Sochaux advances; 3-0 aggregate) Villarreal 2-0 Torino(Villarreal advances on penalty kicks) Aston Villa 3-0 Zurich(Aston Villa advances; 3-2 aggregate)
Semi Finals, 1st Leg
Lille 1-1 Aston Villa Fulham 1-0 Sochaux Stuttgart 2-1 Slaven Belupo Bologna 5-1 Teplice Malaga 2-1 Willem II Villarreal 0-0 Troyes
Semi Finals, 2nd Leg
Aston Villa 0-2 Lille(Lille advances; 3-1 on aggregate) Fulham 2-0 Sochaux(Fulham advances; 3-0 on aggregate) Slaven Belupo 0-1 Stuttgart(Stuttgart advances; 3-1 on aggregate) Teplice 1-3 Bologna(Bologna advances; 8-2 on aggregate) Willem II 0-1 Malaga(Malaga advances; 3-1 on aggregate) Troyes 0-3 Villarreal(Villarreal advances after Troyes fields ineligible player)
Finals, 1st Leg
Villarreal 0-1 Malaga Bologna 2-2 Fulham Lille 1-0 Stuttgart
Finals, 2nd Leg
Malaga 1-1 Villarreal(Malaga advance to UEFA Cup; 2-1 on aggregate) Bologna 1-3 Fulham(Fulham advance to UEFA Cup; 5-3 on aggregate) Suttgart 2-0 Lille(Stuttgart advance to UEFA Cup; 2-1 on aggregate)
UEFA Cup